PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID DCAR_029117
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Apiales; Apiineae; Apiaceae; Apioideae; Scandiceae; Daucinae; Daucus
Family LBD
Protein Properties Length: 211aa    MW: 22807.7 Da    PI: 7.3434
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
DCAR_029117genomeARS-USDAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26097.61.3e-302105198
       DUF260   1 aCaaCkvlrrkCakdCvlapyf......paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                  +C++C+vlr++C+++C+l++ +      p++q++++ +v+k+FG++ ++++l+a+pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q+++
  DCAR_029117   2 SCNGCRVLRKGCNENCILRQSLqgidhsPQAQANATVFVAKFFGRAGLMSFLSAVPELQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAV 99 
                  6************************************************************************************************* PP

       DUF260  93 elallk 98 
                  e++l++
  DCAR_029117 100 ETVLRG 105
                  998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.9471108IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-262102IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MSCNGCRVLR KGCNENCILR QSLQGIDHSP QAQANATVFV AKFFGRAGLM SFLSAVPELQ  60
RPALFQSLLF EACGRTVNPV NGAVGLLWTG NWHVCQAAVE TVLRGGELSS SSEFFAGAPA  120
PGSDVIDLFR SSSQELNESE RYNFDHDVAR AHLSNLDLSL TSNLPAEIFS GGRAKRRPPS  180
EESETTTFGS GVVCNNQSLR GERKLLRLFI *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092710.13e-82PREDICTED: LOB domain-containing protein 37-like
SwissprotQ9SZE85e-65LBD39_ARATH; LOB domain-containing protein 39
TrEMBLM1CF435e-79M1CF43_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000661651e-78(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9662490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-65LOB domain-containing protein 38